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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C008502P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | Nin-like | ||||||||
Protein Properties | Length: 234aa MW: 27719.4 Da PI: 6.2954 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79.6 | 3.3e-25 | 120 | 167 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + le+++kyF+ pi +AAke++v+lTvLKr+CRq++I+RWPhRk ksl MELO3C008502P1 120 LGLEEIRKYFHIPISKAAKEMNVGLTVLKRRCRQLNIMRWPHRKHKSL 167 6799****************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.587 | 107 | 189 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-22 | 120 | 167 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MDSNPQTLHN IIPQFDFEWL HEDLFPLHNE LDELPPLDND ELLDVNSRSL LPFHLDDNDV 60 LEFDSEFLSR ELEMVEIERN GFSSTWKEEE EEEEEEEGEK RLRLMGNNNG NKRRKGSFVL 120 GLEEIRKYFH IPISKAAKEM NVGLTVLKRR CRQLNIMRWP HRKHKSLNSL IQNVKEMGLT 180 NEVKGLEEHK RLLEEMPNMD LTHTVKRLRQ ACFKANYKKN RRLRSNNIAS LHH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681850 | 0.0 | LN681850.1 Cucumis melo genomic scaffold, anchoredscaffold01597. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008466842.1 | 1e-169 | PREDICTED: protein RKD4 | ||||
TrEMBL | E5GBA6 | 1e-169 | E5GBA6_CUCME; Transcription factor | ||||
STRING | Solyc03g083040.1.1 | 2e-49 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-41 | RWP-RK domain-containing protein |